If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ), 'gf_id' => 'HOM05D000741', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000741' ), 'data_identifier' => 'HOM05D000741', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000741', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '787', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11700' => 'bna', 'A03p31230' => 'bna', 'A08p14500' => 'bna', 'Aa31LG6G2280' => 'aar', 'Aa31LG6G2300' => 'aar', 'Aa31LG7G8170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1920' => 'aag', 'Actinidia04267' => 'ach', 'Actinidia04268' => 'ach', 'Actinidia04272' => 'ach', 'Actinidia23094' => 'ach', 'Actinidia38347' => 'ach', 'Ah.02g120180' => 'amhyb', 'Ah.02g120730' => 'amhyb', 'Ah.09g230580' => 'amhyb', 'Ah.09g230590' => 'amhyb', 'Ah.14g083400' => 'amhyb', 'Ah.15g091150' => 'amhyb', 'AL7G34270' => 'aly', 'AL7G34280' => 'aly', 'AL7G34290' => 'aly', 'AL7G34310' => 'aly', 'Aqoxy2G01643' => 'aox', 'Aqoxy7G03481' => 'aox', 'Aqoxy7G03482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1D4BVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RR2W1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UB9ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78KVCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85P1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PGZ4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A977GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AT1RLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9R3MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIY695' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN0VN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4VGVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LHA0CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA8IL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY72QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y583I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMX3MK' => 'arhy', 'AT4G19720' => 'ath', 'AT4G19730' => 'ath', 'AT4G19740' => 'ath', 'AT4G19750' => 'ath', 'AT4G19760' => 'ath', 'AT4G19770' => 'ath', 'AT4G19800' => 'ath', 'AT4G19810' => 'ath', 'AT4G19820' => 'ath', 'ATR0184G031' => 'atr', 'ATR0807G190' => 'atr', 'Atru.chr10.2114' => 'acertr', 'Atru.chr10.2116' => 'acertr', 'Atru.chr10.2117' => 'acertr', 'Atru.chr10.878' => 'acertr', 'Atru.chr10.885' => 'acertr', 'Atru.chr12.1385' => 'acertr', 'Atru.chr2.1457' => 'acertr', 'Atru.chr2.2438' => 'acertr', 'Atru.chr2.2442' => 'acertr', 'Atru.chr2.535' => 'acertr', 'Atru.chr3.3415' => 'acertr', 'Atru.chr5.2676' => 'acertr', 'Atru.chr7.1354' => 'acertr', 'Atru.chr7.2520' => 'acertr', 'Atru.chr7.56' => 'acertr', 'AUR62010870' => 'cqu', 'AUR62010896' => 'cqu', 'AUR62010917' => 'cqu', 'AUR62021380' => 'cqu', 'AUR62021381' => 'cqu', 'AUR62021382' => 'cqu', 'AUR62021383' => 'cqu', 'AUR62033299' => 'cqu', 'AUR62033300' => 'cqu', 'AUR62033301' => 'cqu', 'AUR62033302' => 'cqu', 'AUR62033303' => 'cqu', 'BcaB01g02423' => 'bca', 'BcaB02g10026' => 'bca', 'BcaB03g11642' => 'bca', 'BcaC01g00634' => 'bca', 'BcaC09g51366' => 'bca', 'BcaC09g51368' => 'bca', 'BcaC09g51371' => 'bca', 'BcaNung01749' => 'bca', 'BcaNung01750' => 'bca', 'BolC1t01353H' => 'bol', 'BolC1t01355H' => 'bol', 'BolC3t20516H' => 'bol', 'BraA01t01112Z' => 'bra', 'BraA03t12303Z' => 'bra', 'BraA08t33438Z' => 'bra', 'C01p13850' => 'bna', 'C01p13870' => 'bna', 'C03p82360' => 'bna', 'CAN.G11.33' => 'can', 'CAN.G520.11' => 'can', 'CAN.G520.21' => 'can', 'CAN.G520.24' => 'can', 'CAN.G520.25' => 'can', 'CAN.G520.26' => 'can', 'CAN.G520.29' => 'can', 'CAN.G520.30' => 'can', 'CANSAT11G0208' => 'cansat', 'CANSAT11G0781' => 'cansat', 'CANSAT11G1139' => 'cansat', 'CANSAT11G1323' => 'cansat', 'CANSAT11G1381' => 'cansat', 'CANSAT11G1495' => 'cansat', 'CANSAT11G1924' => 'cansat', 'CANSAT11G2370' => 'cansat', 'CANSAT11G2481' => 'cansat', 'CANSAT11G2556' => 'cansat', 'CANSAT11G2579' => 'cansat', 'CANSAT54G1021' => 'cansat', 'CARHR000020' => 'chi', 'CARHR054930' => 'chi', 'CARHR054940' => 'chi', 'CARHR116930' => 'chi', 'CARHR226540' => 'chi', 'CARHR226550' => 'chi', 'CARHR226560' => 'chi', 'CARHR226570' => 'chi', 'CARHR226580' => 'chi', 'CARHR226590' => 'chi', 'Carub.0007s2139' => 'cru', 'Carub.0007s2140' => 'cru', 'Carub.0007s2141' => 'cru', 'Carub.0007s2142' => 'cru', 'Carub.0007s2143' => 'cru', 'Ca_13053_v3' => 'car', 'Ca_15576_v3' => 'car', 'Ca_21599_v3' => 'car', 'Ca_21600_v3' => 'car', 'Ca_21624_v3' => 'car', 'Ca_21625_v3' => 'car', 'Cc06_g15410' => 'ccan', 'Cc06_g15420' => 'ccan', 'Cc06_g15430' => 'ccan', 'Cc06_g15440' => 'ccan', 'Cc06_g15460' => 'ccan', 'Cc06_g15470' => 'ccan', 'Cfa005354' => 'cfa', 'Cfa005355' => 'cfa', 'Cfa013082' => 'cfa', 'Cfa016765' => 'cfa', 'Cfa019201' => 'cfa', 'Cfa020861' => 'cfa', 'Cfa020863' => 'cfa', 'Cfa021105' => 'cfa', 'Cfa023688' => 'cfa', 'Cfa024856' => 'cfa', 'Ciclev10007520m.g' => 'ccl', 'Ciclev10008669m.g' => 'ccl', 'Ciclev10010227m.g' => 'ccl', 'Ciclev10010726m.g' => 'ccl', 'Ciclev10010729m.g' => 'ccl', 'Ciclev10010769m.g' => 'ccl', 'Ciclev10027866m.g' => 'ccl', 'Ciclev10027910m.g' => 'ccl', 'Ciclev10030156m.g' => 'ccl', 'Ciclev10030182m.g' => 'ccl', 'CiPaw.14G091600' => 'cil', 'CiPaw.15G128700' => 'cil', 'CiPaw.15G128800' => 'cil', 'CiPaw.15G128900' => 'cil', 'CiPaw.15G138700' => 'cil', 'CiPaw.15G171600' => 'cil', 'CiPaw.15G171700' => 'cil', 'CiPaw.15G171900' => 'cil', 'CiPaw.15G172100' => 'cil', 'CiPaw.15G172400' => 'cil', 'CiPaw.15G172500' => 'cil', 'CiPaw.15G172800' => 'cil', 'CiPaw.15G172900' => 'cil', 'CiPaw.15G173000' => 'cil', 'CiPaw.16G115800' => 'cil', 'CiPaw.16G116000' => 'cil', 'CiPaw.16G116200' => 'cil', 'ClCG00G006390' => 'cla', 'ClCG04G000480' => 'cla', 'ClCG06G012140' => 'cla', 'ClCG06G012150' => 'cla', 'ClCG06G012160' => 'cla', 'ClCG11G003580' => 'cla', 'ClCG11G003590' => 'cla', 'ClCG11G003600' => 'cla', 'COL.COLO4_18739' => 'col', 'COL.COLO4_18755' => 'col', 'COL.COLO4_18756' => 'col', 'COL.COLO4_18757' => 'col', 'COL.COLO4_18759' => 'col', 'COL.COLO4_18760' => 'col', 'COL.COLO4_18933' => 'col', 'COL.COLO4_20111' => 'col', 'COL.COLO4_20112' => 'col', 'Cpa.g.sc127.9' => 'cpa', 'Cre05.g233304' => 'cre', 'Cre07.g317250' => 'cre', 'Cre13.g570700' => 'cre', 'CsaV3_1G028630' => 'csa', 'CsaV3_1G028640' => 'csa', 'CsaV3_1G028650' => 'csa', 'CsaV3_2G003450' => 'csa', 'CSS0005007' => 'camsi', 'CSS0005604' => 'camsi', 'CSS0005761' => 'camsi', 'CSS0007129' => 'camsi', 'CSS0014196' => 'camsi', 'CSS0015765' => 'camsi', 'CSS0028973' => 'camsi', 'CSS0030724' => 'camsi', 'CSS0037230' => 'camsi', 'CSS0039683' => 'camsi', 'CSS0039710' => 'camsi', 'CSS0043648' => 'camsi', 'CSS0047193' => 'camsi', 'CSS0048425' => 'camsi', 'CSS0049221' => 'camsi', 'DCAR_005867' => 'dca', 'DCAR_010192' => 'dca', 'DCAR_014821' => 'dca', 'DCAR_014822' => 'dca', 'DCAR_014823' => 'dca', 'DCAR_014824' => 'dca', 'DCAR_014825' => 'dca', 'DCAR_026328' => 'dca', 'Dinv17808' => 'din', 'Dinv41407' => 'din', 'Dinv41408' => 'din', 'Dinv41409' => 'din', 'Dinv41410' => 'din', 'Dinv42895' => 'din', 'Dinv42897' => 'din', 'Dinv42898' => 'din', 'Dinv43203' => 'din', 'Dinv43204' => 'din', 'Dinv43206' => 'din', 'Duzib150G0015' => 'dzi', 'Duzib150G0368' => 'dzi', 'Duzib150G0724' => 'dzi', 'Duzib150G1442' => 'dzi', 'Duzib168G0171' => 'dzi', 'Duzib168G0323' => 'dzi', 'Duzib168G0820' => 'dzi', 'Duzib168G0992' => 'dzi', 'Duzib168G1344' => 'dzi', 'Duzib168G2060' => 'dzi', 'Duzib168G2174' => 'dzi', 'Duzib168G2267' => 'dzi', 'ECA236G4354' => 'eca', 'ECA240G3947' => 'eca', 'ECA246G3806' => 'eca', 'ECA246G5095' => 'eca', 'EL10Ac8g18360' => 'bvu', 'Eucgr.C00383' => 'egr', 'Eucgr.C00386' => 'egr', 'Eucgr.C00389' => 'egr', 'Eucgr.C00392' => 'egr', 'Eucgr.C00393' => 'egr', 'Eucgr.C00394' => 'egr', 'Eucgr.C00395' => 'egr', 'Eucgr.C00396' => 'egr', 'Eucgr.C00397' => 'egr', 'Eucgr.C00398' => 'egr', 'Eucgr.C00399' => 'egr', 'Eucgr.C00400' => 'egr', 'Eucgr.C01666' => 'egr', 'Eucgr.C01669' => 'egr', 'Eucgr.C01977' => 'egr', 'Eucgr.C01978' => 'egr', 'Eucgr.C01979' => 'egr', 'Eucgr.C01980' => 'egr', 'Eucgr.C04051' => 'egr', 'Eucgr.C04060' => 'egr', 'Eucgr.L00614' => 'egr', 'Eucgr.L00615' => 'egr', 'Eucgr.L01120' => 'egr', 'Eucgr.L02946' => 'egr', 'FAN15G0354' => 'fan', 'FAN18G1484' => 'fan', 'FAN19G0725' => 'fan', 'FAN19G1141' => 'fan', 'FAN19G1824' => 'fan', 'FAN19G3128' => 'fan', 'FAN20G0346' => 'fan', 'FAN20G1639' => 'fan', 'FAN23G0618' => 'fan', 'FAN23G1732' => 'fan', 'FAN26G0945' => 'fan', 'FAN26G1870' => 'fan', 'FAN27G2284' => 'fan', 'FAN27G2482' => 'fan', 'FAN28G1371' => 'fan', 'FvH4_1g01321' => 'fve', 'FvH4_1g01340' => 'fve', 'FvH4_1g01350' => 'fve', 'FvH4_1g01362' => 'fve', 'FvH4_1g01364' => 'fve', 'FvH4_1g01382' => 'fve', 'FvH4_1g01383' => 'fve', 'FvH4_2g40880' => 'fve', 'Glyma.13G155800' => 'gma', 'Glyma.14G110700' => 'gma', 'Glyma.15G206400' => 'gma', 'Glyma.15G206800' => 'gma', 'Glyma.17G076100' => 'gma', 'Glyma.17G103500' => 'gma', 'Glyma.17G217000' => 'gma', 'Gohir.A05G050400' => 'ghi', 'Gohir.A05G050500' => 'ghi', 'Gohir.A07G025200' => 'ghi', 'Gohir.A07G025280' => 'ghi', 'Gohir.A07G025360' => 'ghi', 'Gohir.A07G025400' => 'ghi', 'Gohir.A13G180100' => 'ghi', 'Gohir.A13G185000' => 'ghi', 'Gohir.A13G185300' => 'ghi', 'Gohir.D05G052000' => 'ghi', 'Gohir.D05G052100' => 'ghi', 'Gohir.D07G028700' => 'ghi', 'Gohir.D07G028800' => 'ghi', 'Gohir.D07G029100' => 'ghi', 'Gohir.D13G188200' => 'ghi', 'Gohir.D13G191500' => 'ghi', 'Gohir.D13G191600' => 'ghi', 'Gohir.D13G191700' => 'ghi', 'Gohir.D13G191800' => 'ghi', 'Gorai.001G030000' => 'gra', 'Gorai.001G030100' => 'gra', 'Gorai.001G030200' => 'gra', 'Gorai.001G030300' => 'gra', 'Gorai.001G030400' => 'gra', 'Gorai.009G053800' => 'gra', 'Gorai.009G053900' => 'gra', 'Gorai.010G243800' => 'gra', 'Gorai.013G217600' => 'gra', 'Gorai.013G217700' => 'gra', 'GSVIVG01001058001' => 'vvi', 'GSVIVG01001059001' => 'vvi', 'GSVIVG01001064001' => 'vvi', 'GSVIVG01001068001' => 'vvi', 'GSVIVG01001074001' => 'vvi', 'GSVIVG01003718001' => 'vvi', 'GSVIVG01007371001' => 'vvi', 'GSVIVG01007373001' => 'vvi', 'HanXRQChr03g0075501' => 'han', 'HanXRQChr05g0141441' => 'han', 'HanXRQChr05g0141451' => 'han', 'HanXRQChr05g0141461' => 'han', 'HanXRQChr05g0141491' => 'han', 'HanXRQChr09g0243281' => 'han', 'HanXRQChr10g0281681' => 'han', 'HanXRQChr14g0434651' => 'han', 'HanXRQChr14g0434681' => 'han', 'HanXRQChr14g0434711' => 'han', 'Haze_01869' => 'cav', 'Haze_01872' => 'cav', 'Haze_01873' => 'cav', 'Haze_02012' => 'cav', 'Haze_18528' => 'cav', 'Haze_18529' => 'cav', 'Haze_18532' => 'cav', 'Haze_18533' => 'cav', 'Haze_18534' => 'cav', 'Haze_18535' => 'cav', 'Haze_18536' => 'cav', 'Haze_18537' => 'cav', 'Haze_18538' => 'cav', 'Haze_18541' => 'cav', 'Haze_18543' => 'cav', 'Haze_18737' => 'cav', 'Haze_19248' => 'cav', 'Haze_19249' => 'cav', 'Haze_19251' => 'cav', 'Haze_19252' => 'cav', 'Haze_19255' => 'cav', 'Haze_19256' => 'cav', 'Haze_19258' => 'cav', 'Haze_19259' => 'cav', 'Haze_19270' => 'cav', 'Haze_19271' => 'cav', 'Haze_19273' => 'cav', 'Haze_19276' => 'cav', 'Haze_19281' => 'cav', 'Haze_19283' => 'cav', 'Haze_19287' => 'cav', 'Haze_19288' => 'cav', 'Haze_19369' => 'cav', 'Haze_19775' => 'cav', 'Haze_20330' => 'cav', 'Haze_21439' => 'cav', 'Hma1.2p1_0028F.1_g017240' => 'hma', 'Hma1.2p1_0028F.1_g017260' => 'hma', 'Hma1.2p1_0028F.1_g017270' => 'hma', 'Hma1.2p1_0230F.1_g097250' => 'hma', 'HPP92_021451' => 'vpl', 'Hund21606' => 'sun', 'Hund26497' => 'sun', 'Hund26498' => 'sun', 'Lalb_Chr07g0179641' => 'lal', 'Lalb_Chr07g0179661' => 'lal', 'Lalb_Chr07g0179671' => 'lal', 'Lalb_Chr07g0179681' => 'lal', 'Lalb_Chr08g0233901' => 'lal', 'Lalb_Chr13g0301101' => 'lal', 'Lalb_Chr24g0402051' => 'lal', 'Lj4g0016455' => 'lja', 'Lj4g0024525' => 'lja', 'Lj4g0025435' => 'lja', 'Lj5g0003799' => 'lja', 'Lj5g0006187' => 'lja', 'Lj5g0009602' => 'lja', 'Lj6g0000028' => 'lja', 'Lj7P730T15' => 'lonja', 'Lj9A712G57' => 'lonja', 'Lj9C712T1' => 'lonja', 'Lj9C712T2' => 'lonja', 'Lj9C712T3' => 'lonja', 'Lj9P711T37' => 'lonja', 'Lju50A7G24' => 'lonja', 'Lju50C5T0' => 'lonja', 'Lju583C0T4' => 'lonja', 'Lsat_1_v5_gn_6_114620' => 'lsa', 'Lsat_1_v5_gn_6_114640' => 'lsa', 'Lsat_1_v5_gn_8_59300' => 'lsa', 'Manes.14G111300' => 'mes', 'Manes.14G111400' => 'mes', 'Manes.14G141000' => 'mes', 'Manes.14G144300' => 'mes', 'Manes.16G127400' => 'mes', 'Mapoly0081s0081' => 'mpo', 'MBI07_g04036_MAGBIO' => 'mbi', 'MBI14_g30671_MAGBIO' => 'mbi', 'MBI15_g16945_MAGBIO' => 'mbi', 'MBI15_g36791_MAGBIO' => 'mbi', 'MBI15_g36794_MAGBIO' => 'mbi', 'MD02G1011100' => 'mdo', 'MD02G1011200' => 'mdo', 'MD02G1011300' => 'mdo', 'MD02G1011400' => 'mdo', 'MD08G1059100' => 'mdo', 'MD14G1173400' => 'mdo', 'MD15G1037300' => 'mdo', 'MD15G1156100' => 'mdo', 'MD15G1156200' => 'mdo', 'MD15G1156300' => 'mdo', 'MD15G1156400' => 'mdo', 'MD15G1156500' => 'mdo', 'MD15G1156600' => 'mdo', 'MD15G1156800' => 'mdo', 'MD15G1156900' => 'mdo', 'MD15G1157000' => 'mdo', 'MD15G1157100' => 'mdo', 'Medtr1g013150' => 'mtr', 'Medtr3g110280' => 'mtr', 'Medtr3g110320' => 'mtr', 'Medtr4g116920' => 'mtr', 'Medtr4g116990' => 'mtr', 'Medtr4g117000' => 'mtr', 'Medtr4g117020' => 'mtr', 'Medtr4g117030' => 'mtr', 'Medtr4g117040' => 'mtr', 'Medtr4g117800' => 'mtr', 'Medtr7g096730' => 'mtr', 'MELO3C010248.2' => 'cme', 'MELO3C010249.2' => 'cme', 'MELO3C010250.2' => 'cme', 'MELO3C031568.2' => 'cme', 'Migut.K00355' => 'egut', 'Migut.K00356' => 'egut', 'MSTRG.10629' => 'ama', 'MSTRG.10630' => 'ama', 'MSTRG.22032' => 'ama', 'MSTRG.6100' => 'ama', 'MSTRG.6101' => 'ama', 'Nitab4.5_0000416g0130' => 'nta', 'Nitab4.5_0000416g0140' => 'nta', 'Nitab4.5_0000416g0180' => 'nta', 'Nitab4.5_0000416g0210' => 'nta', 'Nitab4.5_0000416g0220' => 'nta', 'Nitab4.5_0000416g0240' => 'nta', 'Nitab4.5_0000416g0250' => 'nta', 'Nitab4.5_0001094g0010' => 'nta', 'Nitab4.5_0001094g0020' => 'nta', 'Nitab4.5_0001094g0030' => 'nta', 'Nitab4.5_0003041g0050' => 'nta', 'Nitab4.5_0003856g0020' => 'nta', 'Nitab4.5_0003856g0070' => 'nta', 'Nitab4.5_0011528g0010' => 'nta', 'Nitab4.5_0011528g0020' => 'nta', 'Nitab4.5_0011528g0040' => 'nta', 'Nitab4.5_0014153g0010' => 'nta', 'Nn028s41569' => 'nnu', 'Nn028s41573' => 'nnu', 'Nn107s43244' => 'nnu', 'Nn107s43247' => 'nnu', 'Nn107s43248' => 'nnu', 'Nn235s45565' => 'nnu', 'Nn2g12288' => 'nnu', 'Nn2g12289' => 'nnu', 'Nn2g12301' => 'nnu', 'Nn8g39772' => 'nnu', 'Nn8g39774' => 'nnu', 'Nn8g39777' => 'nnu', 'Nn8g39784' => 'nnu', 'Nn8g39790' => 'nnu', 'Nn8g39791' => 'nnu', 'Nn8g40201' => 'nnu', 'Nn8g40598' => 'nnu', 'Nn8g41292' => 'nnu', 'Nn8g41296' => 'nnu', 'Nn8g41339' => 'nnu', 'Oeu030170.1' => 'oeu', 'Oeu030172.1' => 'oeu', 'Oeu030173.1' => 'oeu', 'Oeu030174.1' => 'oeu', 'Oeu043484.1' => 'oeu', 'Oeu043489.1' => 'oeu', 'Oeu050469.2' => 'oeu', 'Oeu050470.1' => 'oeu', 'Os04g0376400' => 'osa', 'Os11g0462100' => 'osa', 'Peaxi162Scf00045g00450' => 'pax', 'Peaxi162Scf00177g00093' => 'pax', 'Peaxi162Scf00347g00041' => 'pax', 'Peaxi162Scf00347g00056' => 'pax', 'Peaxi162Scf00347g00058' => 'pax', 'Peaxi162Scf00347g00418' => 'pax', 'Peaxi162Scf00347g00419' => 'pax', 'Peaxi162Scf00347g00420' => 'pax', 'Peaxi162Scf00347g00521' => 'pax', 'PGR102G2889' => 'pgr', 'PGR142G0036' => 'pgr', 'PGR142G2102' => 'pgr', 'PGR142G3685' => 'pgr', 'PGSC0003DMG400003191' => 'stu', 'PGSC0003DMG400003205' => 'stu', 'PGSC0003DMG400011836' => 'stu', 'PGSC0003DMG400011842' => 'stu', 'PGSC0003DMG400011843' => 'stu', 'PGSC0003DMG400037480' => 'stu', 'Phvul.001G046400' => 'pvu', 'Phvul.003G158500' => 'pvu', 'Phvul.003G158600' => 'pvu', 'Phvul.003G158700' => 'pvu', 'Phvul.003G158800' => 'pvu', 'Potri.006G188300' => 'ptr', 'Potri.006G188400' => 'ptr', 'Potri.006G261800' => 'ptr', 'Potri.006G262001' => 'ptr', 'Potri.018G111600' => 'ptr', 'Potri.018G111700' => 'ptr', 'Potri.018G111800' => 'ptr', 'Potri.018G111900' => 'ptr', 'Potri.018G112000' => 'ptr', 'Potri.018G112100' => 'ptr', 'Pp3c16_1070' => 'ppa', 'Pp3c5_27410' => 'ppa', 'Prupe.1G391300' => 'ppe', 'Prupe.4G180800' => 'ppe', 'Prupe.7G258400' => 'ppe', 'Prupe.7G258500' => 'ppe', 'Prupe.7G258600' => 'ppe', 'Prupe.7G258800' => 'ppe', 'Prupe.7G258900' => 'ppe', 'Prupe.7G259000' => 'ppe', 'Psat0s5923g0040' => 'psa', 'Psat4g032080' => 'psa', 'Psat4g032120' => 'psa', 'Psat4g033880' => 'psa', 'Psat5g020240' => 'psa', 'PSO063G3272' => 'pso', 'PSO063G3582' => 'pso', 'PSO063G5135' => 'pso', 'PSO063G5643' => 'pso', 'PSO528G0261' => 'pso', 'PSO732G0490' => 'pso', 'PSO732G0596' => 'pso', 'PSO832G2378' => 'pso', 'PSO832G3741' => 'pso', 'QL02p019797' => 'qlo', 'QL02p019804' => 'qlo', 'QL02p077764' => 'qlo', 'QL02p077792' => 'qlo', 'QL02p077821' => 'qlo', 'QL02p091823' => 'qlo', 'QL02p091897' => 'qlo', 'QL02p091903' => 'qlo', 'QL02p091919' => 'qlo', 'QL02p091945' => 'qlo', 'QL02p091947' => 'qlo', 'QL02p091969' => 'qlo', 'QL02p092048' => 'qlo', 'QL02p092124' => 'qlo', 'QL02p092175' => 'qlo', 'QL02p092186' => 'qlo', 'QL02p092227' => 'qlo', 'QL02p092303' => 'qlo', 'QL02p092357' => 'qlo', 'QL02p092364' => 'qlo', 'QL02p092381' => 'qlo', 'QL02p092386' => 'qlo', 'QL02p092392' => 'qlo', 'QL02p092397' => 'qlo', 'QL02p092418' => 'qlo', 'QL03p009100' => 'qlo', 'QL03p009123' => 'qlo', 'RcHm_v2.0_Chr2g0086161' => 'rch', 'RcHm_v2.0_Chr2g0086191' => 'rch', 'RcHm_v2.0_Chr2g0086231' => 'rch', 'RcHm_v2.0_Chr2g0086261' => 'rch', 'RcHm_v2.0_Chr2g0086281' => 'rch', 'RcHm_v2.0_Chr2g0086311' => 'rch', 'RcHm_v2.0_Chr2g0086321' => 'rch', 'RcHm_v2.0_Chr2g0086331' => 'rch', 'RcHm_v2.0_Chr6g0247991' => 'rch', 'RcHm_v2.0_Chr6g0299691' => 'rch', 'Rhsim01G0037000' => 'rsi', 'Rhsim01G0037200' => 'rsi', 'Rhsim01G0037300' => 'rsi', 'Rhsim01G0037400' => 'rsi', 'Rhsim01G0038400' => 'rsi', 'Rhsim01G0038600' => 'rsi', 'Rhsim01G0038700' => 'rsi', 'Rhsim01G0038900' => 'rsi', 'Rhsim01G0039000' => 'rsi', 'Rhsim01G0039100' => 'rsi', 'Rhsim01G0039200' => 'rsi', 'Rhsim01G0039300' => 'rsi', 'Rhsim01G0039400' => 'rsi', 'Rhsim01G0039600' => 'rsi', 'Rhsim01G0039700' => 'rsi', 'Rhsim01G0039800' => 'rsi', 'Rhsim01G0039900' => 'rsi', 'Rhsim01G0040000' => 'rsi', 'Rhsim01G0040100' => 'rsi', 'Rhsim01G0040200' => 'rsi', 'Rhsim01G0040300' => 'rsi', 'Rhsim01G0040500' => 'rsi', 'Rhsim01G0040600' => 'rsi', 'Rhsim01G0040700' => 'rsi', 'Rhsim01G0040800' => 'rsi', 'Rhsim01G0040900' => 'rsi', 'Rhsim01G0041100' => 'rsi', 'Rhsim01G0041200' => 'rsi', 'Rhsim01G0041300' => 'rsi', 'Rhsim01G0041400' => 'rsi', 'Rhsim01G0041600' => 'rsi', 'Rhsim01G0041700' => 'rsi', 'Rhsim01G0041800' => 'rsi', 'Rhsim01G0041900' => 'rsi', 'Rhsim01G0042000' => 'rsi', 'Rhsim01G0042100' => 'rsi', 'Rhsim01G0042200' => 'rsi', 'Rhsim01G0042300' => 'rsi', 'Rhsim01G0042400' => 'rsi', 'Rhsim01G0042500' => 'rsi', 'Rhsim01G0042600' => 'rsi', 'Rhsim01G0046800' => 'rsi', 'Rhsim01G0046900' => 'rsi', 'Rhsim01G0047000' => 'rsi', 'Rhsim01G0047100' => 'rsi', 'Rhsim01G0047200' => 'rsi', 'Rhsim01G0047300' => 'rsi', 'Rhsim01G0187500' => 'rsi', 'Rhsim01G0188600' => 'rsi', 'Sabra06G0144000' => 'sbr', 'Sabra06G0144100' => 'sbr', 'Sabra06G0144200' => 'sbr', 'Sabra06G0144900' => 'sbr', 'Sabra06G0145000' => 'sbr', 'Sabra18G0094100' => 'sbr', 'Sabra18G0094200' => 'sbr', 'Sabra18G0094300' => 'sbr', 'Sabra18G0094400' => 'sbr', 'Sabra18G0094600' => 'sbr', 'Sabra18G0094700' => 'sbr', 'Sabra18G0094900' => 'sbr', 'Sabra18G0095000' => 'sbr', 'Sabra18G0095100' => 'sbr', 'Sabra18G0095200' => 'sbr', 'Sabra18G0095300' => 'sbr', 'Sabra18G0095400' => 'sbr', 'Sabra18G0095500' => 'sbr', 'SalBow1G2968' => 'sbo', 'Sc08g0005510' => 'sci', 'Sc14g0000040' => 'sci', 'Sed0001679' => 'sed', 'Sed0008370' => 'sed', 'Sed0015474' => 'sed', 'Sed0020216' => 'sed', 'Sed0021829' => 'sed', 'Sed0024939' => 'sed', 'SEGI_00636' => 'sgi', 'SEGI_02647' => 'sgi', 'SEGI_02816' => 'sgi', 'SEGI_05546' => 'sgi', 'SEGI_10309' => 'sgi', 'SEGI_12612' => 'sgi', 'SEGI_17256' => 'sgi', 'SEGI_17964' => 'sgi', 'SEGI_31325' => 'sgi', 'SEGI_31490' => 'sgi', 'SEGI_32184' => 'sgi', 'SEGI_36639' => 'sgi', 'SGA_v2.0_scaffold183G39904' => 'sas', 'SGA_v2.0_scaffold206G41841' => 'sas', 'SGA_v2.0_scaffold336G49152' => 'sas', 'SGA_v2.0_scaffold387G50525' => 'sas', 'SHI03250' => 'shi', 'SHI03260' => 'shi', 'SMO118G0224' => 'smo', 'SMO118G0486' => 'smo', 'SMO146G0345' => 'smo', 'SMO164G0063' => 'smo', 'Solyc07g005080.1' => 'sly', 'Solyc07g005090.4' => 'sly', 'Solyc07g005100.4' => 'sly', 'Solyc07g005110.4' => 'sly', 'Sopen07g001210' => 'spe', 'Sopen07g001220' => 'spe', 'Sopen07g001240' => 'spe', 'Sp7g18320' => 'spa', 'TAR371G1134' => 'tar', 'TAR383G0329' => 'tar', 'TAR383G0474' => 'tar', 'TAR383G0887' => 'tar', 'TAR383G0948' => 'tar', 'TAR626G0231' => 'tar', 'TAR626G0380' => 'tar', 'TAR626G0738' => 'tar', 'TAR626G0828' => 'tar', 'TAR636G2696' => 'tar', 'THA.LOC104812912' => 'tha', 'Thecc.09G017700' => 'tca', 'Thecc.09G035100' => 'tca', 'Thecc.09G035300' => 'tca', 'Thecc.09G035400' => 'tca', 'Thecc.09G035600' => 'tca', 'Thecc.09G035700' => 'tca', 'Thecc.09G035900' => 'tca', 'Thecc.09G036000' => 'tca', 'Thecc.09G036100' => 'tca', 'Thhalv10025464m.g' => 'esa', 'TPR.G15091' => 'tpr', 'TPR.G15779' => 'tpr', 'TPR.G15781' => 'tpr', 'TPR.G15803' => 'tpr', 'TPR.G15813' => 'tpr', 'TPR.G33055' => 'tpr', 'TPR.G38902' => 'tpr', 'TWI32G0286' => 'twi', 'TWI32G0881' => 'twi', 'TWI32G1023' => 'twi', 'TWI32G1335' => 'twi', 'TWI34G0004' => 'twi', 'TWI34G0017' => 'twi', 'TWI34G0030' => 'twi', 'TWI34G0122' => 'twi', 'TWI34G0461' => 'twi', 'TWI34G1025' => 'twi', 'TWI34G1137' => 'twi', 'TWI34G1778' => 'twi', 'TWI63G0019' => 'twi', 'TWI63G1137' => 'twi', 'TWI77G0785' => 'twi', 'vmacro13047' => 'vma', 'vmacro15533' => 'vma', 'vmacro20148' => 'vma', 'vmacro20151' => 'vma', 'vmacro21867' => 'vma', 'vmacro21868' => 'vma', 'vmacro23232' => 'vma', 'VMungo0251G2714' => 'vmu', 'VMungo0647G1117' => 'vmu', 'VMungo0720G1240' => 'vmu', 'VMungo0720G1449' => 'vmu', 'VMungo0798G0001' => 'vmu', 'VMungo1215G0305' => 'vmu', 'VMungo1215G0437' => 'vmu', 'VMungo1215G1212' => 'vmu', 'Zm00001eb169950' => 'zma', 'Zm00001eb420850' => 'zma' ) $gf_id = 'HOM05D000741' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000741' ) $data_identifier = 'HOM05D000741' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 15, 'cqu' => (int) 12, 'bca' => (int) 9, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 12, 'chi' => (int) 10, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 10, 'cil' => (int) 17, 'cla' => (int) 8, 'col' => (int) 9, 'cpa' => (int) 1, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 4, 'bvu' => (int) 1, 'egr' => (int) 24, 'fan' => (int) 15, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 36, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 2, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 20, 'oeu' => (int) 8, 'osa' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 27, 'rch' => (int) 10, 'rsi' => (int) 49, 'sbr' => (int) 18, 'sbo' => (int) 1, 'sci' => (int) 2, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 1, 'tar' => (int) 10, 'tha' => (int) 1, 'tca' => (int) 9, 'esa' => (int) 1, 'tpr' => (int) 7, 'twi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420850' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1